Search HymenopteraMine. Enter names, identifiers or keywords for genes, proteins, ontology terms, authors, etc. (e.g. GB45565, GB40018, NM_001011573.1, NMDA receptor 1, ACEP17531, SINV10001).
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HymenopteraMine v1.4 (Release-Updates) integrates genomic data for bees, ants and parasitoid jewel wasp. Expression and variation data are provided for A. mellifera. The tabs below show query template categories. "Alias and DBxref" templates are for id conversion between same-species gene sets. "Entire Gene Set" templates are for querying an organism's entire gene set.
Genes |
Protein |
Homology |
Function |
Entire Gene Set |
Alias and DBxref |
Gene models in HymenopteraMine come from multiple sources including NCBI RefSeq and consortium official gene sets. RefSeq data sources are labeled with 4-letter species code and "_RefSeq" in pull down menus. Consortium data sources are labeled using the original consortium official gene set names, and may have "HGD" appended, if the data source has ids assigned by HGD. Use "ALIAS AND DBXREF" templates to convert identifiers.
Query for genes:
HymenopteraMine includes protein information from UniProt and protein domain information for UniProt proteins from InterPro. Although UniProt uses protein isoform identifiers as primary identifiers, it maps UniProt ids to RefSeq genes rather than to specific Refseq transcript identifiers. Therefore, HymenopteraMine maps UniProt ids to RefSeq genes. Queries relating RefSeq genes to UniProt may produce multiple results per gene due to the presence of protein isoforms.
Query for protein:
HymenopteraMine includes orthologue predictions from Orthodb, which identifies orthologous groups of genes that are descended from a single ancestral gene. HymenopteraMine includes two OrthoDB data sets based on different last common ancestors: one computed based on Hymenoptera and the other computed based on Holometabola, which includes Drosophila melanogaster (a Dipteran). Any orthologous group in HymenopteraMine can include duplicated genes that emerged after divergence from the last common ancestor. All pairwise relationships within an orthologous group are called orthologues even if some might be classified as paralogues in an analysis of a more recent last common ancestor.
Query for homology:
HymenopteraMine includes GO annotations for most species, KEGG pathways for A. mellifera and D. melanogaster, Reactome and Fly Reactome pathways for D. melanogaster, and interactions (BioGRID and IntAct) for D. melanogaster. You can use orthologous relationships to leverage A. mellifera and D. melanogaster information for other species.
Query for function:
The query templates in this category allow you to perform simple queries on an entire gene or protein set for a species.
Query for entire gene set:
All Gene IDs Gene Alias IDs All Genes Database Cross Reference IDs All proteins (UniProt) with associated gene ids All OGS genes Database Cross References (RefSeq) Symbols and Descriptions RefSeq Database Cross Reference ids + Symbols + Descriptions All Genes A. mellifera Homologues A. mellifera Pathways All Gene Alias IDs + Gene IDs + Database Cross Reference IDs Gene idsThe query templates in this category allow you to convert identifiers. Use a database cross reference query template to convert between a RefSeq and consortium gene set with HGD ids. Use an alias query template to convert between HGD ids and original consortium ids, HGD ids and OrthoDB ids, or HGD ids for old vs new gene sets (e.g. amel_OGSv3.2 vs amel_OGSv1.0). You must use the appropriate alias query template for converting either gene ids or transcript ids, depending on the species. For the following species, aliases are provided for transcripts rather than genes because the original gene sets did not have gene ids: A. echinatior, C. biroi, C. floridanus, D. novaeangliae, E. Mexicana, H. laboriosa, H. saltator, L. albipes, M. quadrifasciata, M. rotundata, S. invicta.
Query for alias and dbxref:
Database Cross Reference ID Symbols + Descriptions Gene ID Database Cross Reference ID (e.g. OGS to RefSeq) Gene ID Database Cross Reference ID Alias ID Alias ID + Database Cross Reference ID Transcript ID and Gene ID Transcript ID Gene ID Database Cross Reference IDPlease contact us if you would like any additional template queries or if you have a concern about a query not completing.
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